Merge branch 'master' into spec-resync-12-01-2025

.evergreen/generated_configs/functions.yml

@@ -239,6 +239,19 @@ functions:
         working_dir: src
       type: test
 
+  # Test numpy
+  test numpy:
+    - command: subprocess.exec
+      params:
+        binary: bash
+        args:
+          - .evergreen/just.sh
+          - test-numpy
+        working_dir: src
+        include_expansions_in_env:
+          - TOOLCHAIN_VERSION
+      type: test
+
   # Upload coverage
   upload coverage:
     - command: ec2.assume_role

.evergreen/generated_configs/tasks.yml

@@ -4768,6 +4768,28 @@ tasks:
       - noauth
       - pypy
 
+  # Test numpy tests
+  - name: test-numpy-python3.10
+    commands:
+      - func: test numpy
+        vars:
+          TOOLCHAIN_VERSION: "3.10"
+    tags:
+      - binary
+      - vector
+      - python-3.10
+      - test-numpy
+  - name: test-numpy-python3.14
+    commands:
+      - func: test numpy
+        vars:
+          TOOLCHAIN_VERSION: "3.14"
+    tags:
+      - binary
+      - vector
+      - python-3.14
+      - test-numpy
+
   # Test standard auth tests
   - name: test-standard-auth-v4.2-python3.10-auth-ssl-sharded-cluster
     commands:

.evergreen/generated_configs/variants.yml

@@ -621,3 +621,42 @@ buildvariants:
       - rhel87-small
     expansions:
       STORAGE_ENGINE: inmemory
+
+  # Test numpy tests
+  - name: test-numpy-rhel8
+    tasks:
+      - name: .test-numpy
+    display_name: Test Numpy RHEL8
+    run_on:
+      - rhel87-small
+    tags: [binary, vector, pr]
+  - name: test-numpy-macos
+    tasks:
+      - name: .test-numpy
+    display_name: Test Numpy macOS
+    run_on:
+      - macos-14
+    tags: [binary, vector]
+  - name: test-numpy-macos-arm64
+    tasks:
+      - name: .test-numpy
+    display_name: Test Numpy macOS Arm64
+    run_on:
+      - macos-14-arm64
+    tags: [binary, vector]
+  - name: test-numpy-win64
+    tasks:
+      - name: .test-numpy
+    display_name: Test Numpy Win64
+    run_on:
+      - windows-64-vsMulti-small
+    tags: [binary, vector]
+  - name: test-numpy-win32
+    tasks:
+      - name: .test-numpy
+    display_name: Test Numpy Win32
+    run_on:
+      - windows-64-vsMulti-small
+    expansions:
+      IS_WIN32: "1"
+    tags: [binary, vector]

.evergreen/scripts/generate_config.py

@@ -339,6 +339,37 @@ def create_disable_test_commands_variants():
     return [create_variant(tasks, display_name, host=host, expansions=expansions)]
 
 
+def create_test_numpy_tasks():
+    tasks = []
+    for python in MIN_MAX_PYTHON:
+        tags = ["binary", "vector", f"python-{python}", "test-numpy"]
+        task_name = get_task_name("test-numpy", python=python)
+        test_func = FunctionCall(func="test numpy", vars=dict(TOOLCHAIN_VERSION=python))
+        tasks.append(EvgTask(name=task_name, tags=tags, commands=[test_func]))
+    return tasks
+
+
+def create_test_numpy_variants() -> list[BuildVariant]:
+    variants = []
+    base_display_name = "Test Numpy"
+
+    # Test a subset on each of the other platforms.
+    for host_name in ("rhel8", "macos", "macos-arm64", "win64", "win32"):
+        tasks = [".test-numpy"]
+        host = HOSTS[host_name]
+        tags = ["binary", "vector"]
+        if host_name == "rhel8":
+            tags.append("pr")
+        expansions = dict()
+        if host_name == "win32":
+            expansions["IS_WIN32"] = "1"
+        display_name = get_variant_name(base_display_name, host)
+        variant = create_variant(tasks, display_name, host=host, tags=tags, expansions=expansions)
+        variants.append(variant)
+
+    return variants
+
+
 def create_oidc_auth_variants():
     variants = []
     for host_name in ["ubuntu22", "macos", "win64"]:
@@ -1140,6 +1171,14 @@ def create_run_tests_func():
     return "run tests", [setup_cmd, test_cmd]
 
 
+def create_test_numpy_func():
+    includes = ["TOOLCHAIN_VERSION"]
+    test_cmd = get_subprocess_exec(
+        include_expansions_in_env=includes, args=[".evergreen/just.sh", "test-numpy"]
+    )
+    return "test numpy", [test_cmd]
+
+
 def create_cleanup_func():
     cmd = get_subprocess_exec(args=[".evergreen/scripts/cleanup.sh"])
     return "cleanup", [cmd]

.evergreen/scripts/generate_config_utils.py

@@ -63,7 +63,6 @@ HOSTS["macos"] = Host("macos", "macos-14", "macOS", dict())
 HOSTS["macos-arm64"] = Host("macos-arm64", "macos-14-arm64", "macOS Arm64", dict())
 HOSTS["ubuntu20"] = Host("ubuntu20", "ubuntu2004-small", "Ubuntu-20", dict())
 HOSTS["ubuntu22"] = Host("ubuntu22", "ubuntu2204-small", "Ubuntu-22", dict())
-HOSTS["rhel7"] = Host("rhel7", "rhel79-small", "RHEL7", dict())
 HOSTS["perf"] = Host("perf", "rhel90-dbx-perf-large", "", dict())
 HOSTS["debian11"] = Host("debian11", "debian11-small", "Debian11", dict())
 DEFAULT_HOST = HOSTS["rhel8"]

.evergreen/scripts/setup_tests.py

@@ -1,12 +1,10 @@
 from __future__ import annotations
 
 import base64
-import io
 import os
 import platform
 import shutil
 import stat
-import tarfile
 from pathlib import Path
 from urllib import request
 
@@ -117,9 +115,10 @@ def setup_libmongocrypt():
     LOGGER.info(f"Fetching {url}...")
     with request.urlopen(request.Request(url), timeout=15.0) as response:  # noqa: S310
         if response.status == 200:
-            fileobj = io.BytesIO(response.read())
-        with tarfile.open("libmongocrypt.tar.gz", fileobj=fileobj) as fid:
-            fid.extractall(Path.cwd() / "libmongocrypt")
+            with Path("libmongocrypt.tar.gz").open("wb") as f:
+                f.write(response.read())
+            Path("libmongocrypt").mkdir()
+            run_command("tar -xzf libmongocrypt.tar.gz -C libmongocrypt")
     LOGGER.info(f"Fetching {url}... done.")
 
     run_command("ls -la libmongocrypt")

.github/pull_request_template.md

@@ -1,38 +1,33 @@
 <!-- Thanks for contributing! -->
 <!-- Please ensure that the title of the PR is in the following form:
-[Issue Type]-[Issue Key]: Issue Title
+[JIRA TICKET]: Issue Title
 
 If you are an external contributor and there is no JIRA ticket associated with your change, then use your best judgement
 for the PR title. A MongoDB employee will create a JIRA ticket and edit the name and links as appropriate.
+
+Note on AI Contributions:
+We do not accept pull requests that are primarily or substantially generated by AI tools (ChatGPT, Copilot, etc.).
+All contributions must be written and understood by human contributors.
 -->
-[Issue Key](https://jira.mongodb.org/browse/%7BISSUE_KEY%7D)
-## Summary
-<!-- What conceptually is this PR introducing? If context is already provided from the JIRA ticket, still place it in the
-Pull Request as you should not make the reviewer do digging for a basic summary. -->
+[JIRA TICKET]
 
 ## Changes in this PR
 <!-- What changes did you make to the code? What new APIs (public or private) were added, removed, or edited to generate
 the desired outcome explained in the above summary? -->
 
-## Testing Plan
+## Test Plan
 <!-- How did you test the code? If you added unit tests, you can say that. If you didn’t introduce unit tests, explain why.
 All code should be tested in some way – so please list what your validation strategy was. -->
 
-### Screenshots (optional)
-<!-- Usually a great supplement to a test plan, especially if this requires local testing. -->
-
 ## Checklist
 <!-- Do not delete the items provided on this checklist. -->
+
 ### Checklist for Author
 - [ ] Did you update the changelog (if necessary)?
-- [ ] Is the intention of the code captured in relevant tests?
-- [ ] If there are new TODOs, has a related JIRA ticket been created?
+- [ ] Is there test coverage?
+- [ ] Is any followup work tracked in a JIRA ticket? If so, add link(s).
 
-### Checklist for Reviewer {@primary_reviewer}
+### Checklist for Reviewer
 - [ ] Does the title of the PR reference a JIRA Ticket?
 - [ ] Do you fully understand the implementation? (Would you be comfortable explaining how this code works to someone else?)
-- [ ] Have you checked for spelling & grammar errors?
 - [ ] Is all relevant documentation (README or docstring) updated?
-
-## Focus Areas for Reviewer (optional)
-<!-- List any complex portion of code you believe needs additional scrutiny and explain why. -->

.github/workflows/zizmor.yml

@@ -18,4 +18,4 @@ jobs:
         with:
           persist-credentials: false
       - name: Run zizmor 🌈
-        uses: zizmorcore/zizmor-action@b0e5c0b2b3785bc67b9b6c743fdbd495cda1b4c4
+        uses: zizmorcore/zizmor-action@c0e2b1c877e25a91d1d747c438d49199cad29698

CONTRIBUTING.md

@@ -387,6 +387,11 @@ If you are running one of the `no-responder` tests, omit the `run-server` step.
 To run any of the test suites with minimum supported dependencies, pass `--test-min-deps` to
 `just setup-tests`.
 
+## Testing time-dependent operations
+
+- `test.utils_shared.delay` - One can trigger an arbitrarily long-running operation on the server using this delay utility
+  in combination with a `$where` operation. Use this to test behaviors around timeouts or signals.
+
 ## Adding a new test suite
 
 - If adding new tests files that should only be run for that test suite, add a pytest marker to the file and add

bson/binary.py

@@ -65,6 +65,9 @@ if TYPE_CHECKING:
     from array import array as _array
     from mmap import mmap as _mmap
 
+    import numpy as np
+    import numpy.typing as npt
+
 
 class UuidRepresentation:
     UNSPECIFIED = 0
@@ -234,13 +237,20 @@ class BinaryVector:
 
     __slots__ = ("data", "dtype", "padding")
 
-    def __init__(self, data: Sequence[float | int], dtype: BinaryVectorDtype, padding: int = 0):
+    def __init__(
+        self,
+        data: Union[Sequence[float | int], npt.NDArray[np.number]],
+        dtype: BinaryVectorDtype,
+        padding: int = 0,
+    ):
         """
         :param data: Sequence of numbers representing the mathematical vector.
         :param dtype:  The data type stored in binary
         :param padding: The number of bits in the final byte that are to be ignored
           when a vector element's size is less than a byte
           and the length of the vector is not a multiple of 8.
+          (Padding is equivalent to a negative value of `count` in
+          `numpy.unpackbits <https://numpy.org/doc/stable/reference/generated/numpy.unpackbits.html>`_)
         """
         self.data = data
         self.dtype = dtype
@@ -425,9 +435,19 @@ class Binary(bytes):
         ...
 
     @classmethod
+    @overload
     def from_vector(
         cls: Type[Binary],
-        vector: Union[BinaryVector, list[int], list[float]],
+        vector: npt.NDArray[np.number],
+        dtype: BinaryVectorDtype,
+        padding: int = 0,
+    ) -> Binary:
+        ...
+
+    @classmethod
+    def from_vector(
+        cls: Type[Binary],
+        vector: Union[BinaryVector, list[int], list[float], npt.NDArray[np.number]],
         dtype: Optional[BinaryVectorDtype] = None,
         padding: Optional[int] = None,
     ) -> Binary:
@@ -459,34 +479,72 @@ class Binary(bytes):
             vector = vector.data  # type: ignore
 
         padding = 0 if padding is None else padding
-        if dtype == BinaryVectorDtype.INT8:  # pack ints in [-128, 127] as signed int8
-            format_str = "b"
-            if padding:
-                raise ValueError(f"padding does not apply to {dtype=}")
-        elif dtype == BinaryVectorDtype.PACKED_BIT:  # pack ints in [0, 255] as unsigned uint8
-            format_str = "B"
-            if 0 <= padding > 7:
-                raise ValueError(f"{padding=}. It must be in [0,1, ..7].")
-            if padding and not vector:
-                raise ValueError("Empty vector with non-zero padding.")
-        elif dtype == BinaryVectorDtype.FLOAT32:  # pack floats as float32
-            format_str = "f"
-            if padding:
-                raise ValueError(f"padding does not apply to {dtype=}")
-        else:
-            raise NotImplementedError("%s not yet supported" % dtype)
-
+        if not isinstance(dtype, BinaryVectorDtype):
+            raise TypeError(
+                "dtype must be a bson.BinaryVectorDtype of BinaryVectorDType.INT8, PACKED_BIT, FLOAT32"
+            )
         metadata = struct.pack("<sB", dtype.value, padding)
-        data = struct.pack(f"<{len(vector)}{format_str}", *vector)  # type: ignore
+
+        if isinstance(vector, list):
+            if dtype == BinaryVectorDtype.INT8:  # pack ints in [-128, 127] as signed int8
+                format_str = "b"
+                if padding:
+                    raise ValueError(f"padding does not apply to {dtype=}")
+            elif dtype == BinaryVectorDtype.PACKED_BIT:  # pack ints in [0, 255] as unsigned uint8
+                format_str = "B"
+                if 0 <= padding > 7:
+                    raise ValueError(f"{padding=}. It must be in [0,1, ..7].")
+                if padding and not vector:
+                    raise ValueError("Empty vector with non-zero padding.")
+            elif dtype == BinaryVectorDtype.FLOAT32:  # pack floats as float32
+                format_str = "f"
+                if padding:
+                    raise ValueError(f"padding does not apply to {dtype=}")
+            else:
+                raise NotImplementedError("%s not yet supported" % dtype)
+            data = struct.pack(f"<{len(vector)}{format_str}", *vector)
+        else:  # vector is numpy array or incorrect type.
+            try:
+                import numpy as np
+            except ImportError as exc:
+                raise ImportError(
+                    "Failed to create binary from vector. Check type. If numpy array, numpy must be installed."
+                ) from exc
+            if not isinstance(vector, np.ndarray):
+                raise TypeError(
+                    "Could not create Binary. Vector must be a BinaryVector, list[int], list[float] or numpy ndarray."
+                )
+            if vector.ndim != 1:
+                raise ValueError(
+                    "from_numpy_vector only supports 1D arrays as it creates a single vector."
+                )
+
+            if dtype == BinaryVectorDtype.FLOAT32:
+                vector = vector.astype(np.dtype("float32"), copy=False)
+            elif dtype == BinaryVectorDtype.INT8:
+                if vector.min() >= -128 and vector.max() <= 127:
+                    vector = vector.astype(np.dtype("int8"), copy=False)
+                else:
+                    raise ValueError("Values found outside INT8 range.")
+            elif dtype == BinaryVectorDtype.PACKED_BIT:
+                if vector.min() >= 0 and vector.max() <= 127:
+                    vector = vector.astype(np.dtype("uint8"), copy=False)
+                else:
+                    raise ValueError("Values found outside UINT8 range.")
+            else:
+                raise NotImplementedError("%s not yet supported" % dtype)
+            data = vector.tobytes()
+
         if padding and len(vector) and not (data[-1] & ((1 << padding) - 1)) == 0:
             raise ValueError(
                 "Vector has a padding P, but bits in the final byte lower than P are non-zero. They must be zero."
             )
         return cls(metadata + data, subtype=VECTOR_SUBTYPE)
 
-    def as_vector(self) -> BinaryVector:
-        """From the Binary, create a list of numbers, along with dtype and padding.
+    def as_vector(self, return_numpy: bool = False) -> BinaryVector:
+        """From the Binary, create a list or 1-d numpy array of numbers, along with dtype and padding.
 
+        :param return_numpy: If True, BinaryVector.data will be a one-dimensional numpy array. By default, it is a list.
         :return: BinaryVector
 
         .. versionadded:: 4.10
@@ -495,54 +553,84 @@ class Binary(bytes):
         if self.subtype != VECTOR_SUBTYPE:
             raise ValueError(f"Cannot decode subtype {self.subtype} as a vector")
 
-        position = 0
-        dtype, padding = struct.unpack_from("<sB", self, position)
-        position += 2
+        dtype, padding = struct.unpack_from("<sB", self)
         dtype = BinaryVectorDtype(dtype)
-        n_values = len(self) - position
+        offset = 2
+        n_bytes = len(self) - offset
 
         if padding and dtype != BinaryVectorDtype.PACKED_BIT:
             raise ValueError(
                 f"Corrupt data. Padding ({padding}) must be 0 for all but PACKED_BIT dtypes. ({dtype=})"
             )
 
-        if dtype == BinaryVectorDtype.INT8:
-            dtype_format = "b"
-            format_string = f"<{n_values}{dtype_format}"
-            vector = list(struct.unpack_from(format_string, self, position))
-            return BinaryVector(vector, dtype, padding)
+        if not return_numpy:
+            if dtype == BinaryVectorDtype.INT8:
+                dtype_format = "b"
+                format_string = f"<{n_bytes}{dtype_format}"
+                vector = list(struct.unpack_from(format_string, self, offset))
+                return BinaryVector(vector, dtype, padding)
 
-        elif dtype == BinaryVectorDtype.FLOAT32:
-            n_bytes = len(self) - position
-            n_values = n_bytes // 4
-            if n_bytes % 4:
-                raise ValueError(
-                    "Corrupt data. N bytes for a float32 vector must be a multiple of 4."
-                )
-            dtype_format = "f"
-            format_string = f"<{n_values}{dtype_format}"
-            vector = list(struct.unpack_from(format_string, self, position))
-            return BinaryVector(vector, dtype, padding)
+            elif dtype == BinaryVectorDtype.FLOAT32:
+                n_values = n_bytes // 4
+                if n_bytes % 4:
+                    raise ValueError(
+                        "Corrupt data. N bytes for a float32 vector must be a multiple of 4."
+                    )
+                dtype_format = "f"
+                format_string = f"<{n_values}{dtype_format}"
+                vector = list(struct.unpack_from(format_string, self, offset))
+                return BinaryVector(vector, dtype, padding)
 
-        elif dtype == BinaryVectorDtype.PACKED_BIT:
-            # data packed as uint8
-            if padding and not n_values:
-                raise ValueError("Corrupt data. Vector has a padding P, but no data.")
-            if padding > 7 or padding < 0:
-                raise ValueError(f"Corrupt data. Padding ({padding}) must be between 0 and 7.")
-            dtype_format = "B"
-            format_string = f"<{n_values}{dtype_format}"
-            unpacked_uint8s = list(struct.unpack_from(format_string, self, position))
-            if padding and n_values and unpacked_uint8s[-1] & (1 << padding) - 1 != 0:
-                warnings.warn(
-                    "Vector has a padding P, but bits in the final byte lower than P are non-zero. For pymongo>=5.0, they must be zero.",
-                    DeprecationWarning,
-                    stacklevel=2,
-                )
-            return BinaryVector(unpacked_uint8s, dtype, padding)
+            elif dtype == BinaryVectorDtype.PACKED_BIT:
+                # data packed as uint8
+                if padding and not n_bytes:
+                    raise ValueError("Corrupt data. Vector has a padding P, but no data.")
+                if padding > 7 or padding < 0:
+                    raise ValueError(f"Corrupt data. Padding ({padding}) must be between 0 and 7.")
+                dtype_format = "B"
+                format_string = f"<{n_bytes}{dtype_format}"
+                unpacked_uint8s = list(struct.unpack_from(format_string, self, offset))
+                if padding and n_bytes and unpacked_uint8s[-1] & (1 << padding) - 1 != 0:
+                    warnings.warn(
+                        "Vector has a padding P, but bits in the final byte lower than P are non-zero. For pymongo>=5.0, they must be zero.",
+                        DeprecationWarning,
+                        stacklevel=2,
+                    )
+                return BinaryVector(unpacked_uint8s, dtype, padding)
 
-        else:
-            raise NotImplementedError("Binary Vector dtype %s not yet supported" % dtype.name)
+            else:
+                raise NotImplementedError("Binary Vector dtype %s not yet supported" % dtype.name)
+        else:  # create a numpy array
+            try:
+                import numpy as np
+            except ImportError as exc:
+                raise ImportError(
+                    "Converting binary to numpy.ndarray requires numpy to be installed."
+                ) from exc
+            if dtype == BinaryVectorDtype.INT8:
+                data = np.frombuffer(self[offset:], dtype="int8")
+            elif dtype == BinaryVectorDtype.FLOAT32:
+                if n_bytes % 4:
+                    raise ValueError(
+                        "Corrupt data. N bytes for a float32 vector must be a multiple of 4."
+                    )
+                data = np.frombuffer(self[offset:], dtype="float32")
+            elif dtype == BinaryVectorDtype.PACKED_BIT:
+                # data packed as uint8
+                if padding and not n_bytes:
+                    raise ValueError("Corrupt data. Vector has a padding P, but no data.")
+                if padding > 7 or padding < 0:
+                    raise ValueError(f"Corrupt data. Padding ({padding}) must be between 0 and 7.")
+                data = np.frombuffer(self[offset:], dtype="uint8")
+                if padding and np.unpackbits(data[-1])[-padding:].sum() > 0:
+                    warnings.warn(
+                        "Vector has a padding P, but bits in the final byte lower than P are non-zero. For pymongo>=5.0, they must be zero.",
+                        DeprecationWarning,
+                        stacklevel=2,
+                    )
+            else:
+                raise NotImplementedError("Binary Vector dtype %s not yet supported" % dtype.name)
+            return BinaryVector(data, dtype, padding)
 
     @property
     def subtype(self) -> int:

doc/changelog.rst

@@ -19,6 +19,7 @@ PyMongo 4.16 brings a number of changes including:
 - Use Zstandard support from the standard library for Python 3.14+, and use ``backports.zstd`` for older versions.
 - Fixed return type annotation for ``find_one_and_*`` methods on :class:`~pymongo.asynchronous.collection.AsyncCollection`
   and :class:`~pymongo.synchronous.collection.Collection` to include ``None``.
+- Added support for NumPy 1D-arrays in :class:`bson.binary.BinaryVector`.
 
 Changes in Version 4.15.5 (2025/XX/XX)
 --------------------------------------

justfile

@@ -2,7 +2,7 @@
 set shell := ["bash", "-c"]
 
 # Commonly used command segments.
-typing_run := "uv run --group typing --extra aws --extra encryption --extra ocsp --extra snappy --extra test --extra zstd"
+typing_run := "uv run --group typing --extra aws --extra encryption --with numpy --extra ocsp --extra snappy --extra test --extra zstd"
 docs_run := "uv run --extra docs"
 doc_build := "./doc/_build"
 mypy_args := "--install-types --non-interactive"
@@ -38,14 +38,14 @@ typing: && resync
 
 [group('typing')]
 typing-mypy: && resync
-    {{typing_run}} mypy {{mypy_args}} bson gridfs tools pymongo
-    {{typing_run}} mypy {{mypy_args}} --config-file mypy_test.ini test
-    {{typing_run}} mypy {{mypy_args}} test/test_typing.py test/test_typing_strict.py
+    {{typing_run}} python -m mypy {{mypy_args}} bson gridfs tools pymongo
+    {{typing_run}} python -m mypy {{mypy_args}} --config-file mypy_test.ini test
+    {{typing_run}} python -m mypy {{mypy_args}} test/test_typing.py test/test_typing_strict.py
 
 [group('typing')]
 typing-pyright: && resync
-    {{typing_run}} pyright test/test_typing.py test/test_typing_strict.py
-    {{typing_run}} pyright -p strict_pyrightconfig.json test/test_typing_strict.py
+    {{typing_run}} python -m pyright test/test_typing.py test/test_typing_strict.py
+    {{typing_run}} python -m pyright -p strict_pyrightconfig.json test/test_typing_strict.py
 
 [group('lint')]
 lint *args="": && resync
@@ -57,7 +57,11 @@ lint-manual *args="": && resync
 
 [group('test')]
 test *args="-v --durations=5 --maxfail=10": && resync
-    uv run --extra test pytest {{args}}
+    uv run --extra test python -m pytest {{args}}
+
+[group('test')]
+test-numpy: && resync
+    uv run --extra test --with numpy python -m pytest test/test_bson.py
 
 [group('test')]
 run-tests *args: && resync

pymongo/asynchronous/database.py

@@ -698,7 +698,7 @@ class AsyncDatabase(common.BaseObject, Generic[_DocumentType]):
         .. versionadded:: 3.9
 
         .. _aggregation pipeline:
-            https://mongodb.com/docs/manual/reference/operator/aggregation-pipeline
+            https://www.mongodb.com/docs/manual/core/aggregation-pipeline/
 
         .. _aggregate command:
             https://mongodb.com/docs/manual/reference/command/aggregate

pymongo/asynchronous/topology.py

@@ -111,7 +111,7 @@ class Topology:
         self._publish_tp = self._listeners is not None and self._listeners.enabled_for_topology
 
         # Create events queue if there are publishers.
-        self._events = None
+        self._events: queue.Queue[Any] | None = None
         self.__events_executor: Any = None
 
         if self._publish_server or self._publish_tp:
@@ -126,6 +126,7 @@ class Topology:
 
         if self._publish_tp:
             assert self._events is not None
+            assert self._listeners is not None
             self._events.put((self._listeners.publish_topology_opened, (self._topology_id,)))
         self._settings = topology_settings
         topology_description = TopologyDescription(
@@ -143,6 +144,7 @@ class Topology:
         )
         if self._publish_tp:
             assert self._events is not None
+            assert self._listeners is not None
             self._events.put(
                 (
                     self._listeners.publish_topology_description_changed,
@@ -161,6 +163,7 @@ class Topology:
         for seed in topology_settings.seeds:
             if self._publish_server:
                 assert self._events is not None
+                assert self._listeners is not None
                 self._events.put((self._listeners.publish_server_opened, (seed, self._topology_id)))
             if _SDAM_LOGGER.isEnabledFor(logging.DEBUG):
                 _debug_log(
@@ -491,6 +494,7 @@ class Topology:
         suppress_event = sd_old == server_description
         if self._publish_server and not suppress_event:
             assert self._events is not None
+            assert self._listeners is not None
             self._events.put(
                 (
                     self._listeners.publish_server_description_changed,
@@ -503,6 +507,7 @@ class Topology:
 
         if self._publish_tp and not suppress_event:
             assert self._events is not None
+            assert self._listeners is not None
             self._events.put(
                 (
                     self._listeners.publish_topology_description_changed,
@@ -570,6 +575,7 @@ class Topology:
 
         if self._publish_tp:
             assert self._events is not None
+            assert self._listeners is not None
             self._events.put(
                 (
                     self._listeners.publish_topology_description_changed,
@@ -723,6 +729,7 @@ class Topology:
         # Publish only after releasing the lock.
         if self._publish_tp:
             assert self._events is not None
+            assert self._listeners is not None
             self._description = TopologyDescription(
                 TOPOLOGY_TYPE.Unknown,
                 {},

pymongo/synchronous/database.py

@@ -698,7 +698,7 @@ class Database(common.BaseObject, Generic[_DocumentType]):
         .. versionadded:: 3.9
 
         .. _aggregation pipeline:
-            https://mongodb.com/docs/manual/reference/operator/aggregation-pipeline
+            https://www.mongodb.com/docs/manual/core/aggregation-pipeline/
 
         .. _aggregate command:
             https://mongodb.com/docs/manual/reference/command/aggregate

pymongo/synchronous/topology.py

@@ -111,7 +111,7 @@ class Topology:
         self._publish_tp = self._listeners is not None and self._listeners.enabled_for_topology
 
         # Create events queue if there are publishers.
-        self._events = None
+        self._events: queue.Queue[Any] | None = None
         self.__events_executor: Any = None
 
         if self._publish_server or self._publish_tp:
@@ -126,6 +126,7 @@ class Topology:
 
         if self._publish_tp:
             assert self._events is not None
+            assert self._listeners is not None
             self._events.put((self._listeners.publish_topology_opened, (self._topology_id,)))
         self._settings = topology_settings
         topology_description = TopologyDescription(
@@ -143,6 +144,7 @@ class Topology:
         )
         if self._publish_tp:
             assert self._events is not None
+            assert self._listeners is not None
             self._events.put(
                 (
                     self._listeners.publish_topology_description_changed,
@@ -161,6 +163,7 @@ class Topology:
         for seed in topology_settings.seeds:
             if self._publish_server:
                 assert self._events is not None
+                assert self._listeners is not None
                 self._events.put((self._listeners.publish_server_opened, (seed, self._topology_id)))
             if _SDAM_LOGGER.isEnabledFor(logging.DEBUG):
                 _debug_log(
@@ -491,6 +494,7 @@ class Topology:
         suppress_event = sd_old == server_description
         if self._publish_server and not suppress_event:
             assert self._events is not None
+            assert self._listeners is not None
             self._events.put(
                 (
                     self._listeners.publish_server_description_changed,
@@ -503,6 +507,7 @@ class Topology:
 
         if self._publish_tp and not suppress_event:
             assert self._events is not None
+            assert self._listeners is not None
             self._events.put(
                 (
                     self._listeners.publish_topology_description_changed,
@@ -570,6 +575,7 @@ class Topology:
 
         if self._publish_tp:
             assert self._events is not None
+            assert self._listeners is not None
             self._events.put(
                 (
                     self._listeners.publish_topology_description_changed,
@@ -721,6 +727,7 @@ class Topology:
         # Publish only after releasing the lock.
         if self._publish_tp:
             assert self._events is not None
+            assert self._listeners is not None
             self._description = TopologyDescription(
                 TOPOLOGY_TYPE.Unknown,
                 {},

pyproject.toml

@@ -59,7 +59,7 @@ mockupdb = [
 ]
 perf = ["simplejson>=3.17.0"]
 typing = [
-    "mypy==1.18.2",
+    "mypy==1.19.0",
     "pyright==1.1.407",
     "typing_extensions",
     "pip"

test/__init__.py

@@ -482,7 +482,7 @@ class ClientContext:
     def drop_user(self, dbname, user):
         self.client[dbname].command("dropUser", user, writeConcern={"w": self.w})
 
-    def require_connection(self, func):
+    def require_connection(self, func: Any) -> Any:
         """Run a test only if we can connect to MongoDB."""
         return self._require(
             lambda: True,  # _require checks if we're connected
@@ -552,7 +552,7 @@ class ClientContext:
             lambda: not self.fips_enabled, "Test cannot run on a FIPS-enabled host", func=func
         )
 
-    def require_replica_set(self, func):
+    def require_replica_set(self, func: Any) -> Any:
         """Run a test only if the client is connected to a replica set."""
         return self._require(lambda: self.is_rs, "Not connected to a replica set", func=func)
 
@@ -638,7 +638,7 @@ class ClientContext:
             lambda: self.load_balancer, "Must be connected to a load balancer", func=func
         )
 
-    def require_no_load_balancer(self, func):
+    def require_no_load_balancer(self, func: Any) -> Any:
         """Run a test only if the client is not connected to a load balancer."""
         return self._require(
             lambda: not self.load_balancer, "Must not be connected to a load balancer", func=func
@@ -687,7 +687,7 @@ class ClientContext:
             lambda: self.test_commands_enabled, "Test commands must be enabled", func=func
         )
 
-    def require_failCommand_fail_point(self, func):
+    def require_failCommand_fail_point(self, func: Any) -> Any:
         """Run a test only if the server supports the failCommand fail
         point.
         """

test/asynchronous/__init__.py

@@ -482,7 +482,7 @@ class AsyncClientContext:
     async def drop_user(self, dbname, user):
         await self.client[dbname].command("dropUser", user, writeConcern={"w": self.w})
 
-    def require_connection(self, func):
+    def require_connection(self, func: Any) -> Any:
         """Run a test only if we can connect to MongoDB."""
         return self._require(
             lambda: True,  # _require checks if we're connected
@@ -552,7 +552,7 @@ class AsyncClientContext:
             lambda: not self.fips_enabled, "Test cannot run on a FIPS-enabled host", func=func
         )
 
-    def require_replica_set(self, func):
+    def require_replica_set(self, func: Any) -> Any:
         """Run a test only if the client is connected to a replica set."""
         return self._require(lambda: self.is_rs, "Not connected to a replica set", func=func)
 
@@ -638,7 +638,7 @@ class AsyncClientContext:
             lambda: self.load_balancer, "Must be connected to a load balancer", func=func
         )
 
-    def require_no_load_balancer(self, func):
+    def require_no_load_balancer(self, func: Any) -> Any:
         """Run a test only if the client is not connected to a load balancer."""
         return self._require(
             lambda: not self.load_balancer, "Must not be connected to a load balancer", func=func
@@ -687,7 +687,7 @@ class AsyncClientContext:
             lambda: self.test_commands_enabled, "Test commands must be enabled", func=func
         )
 
-    def require_failCommand_fail_point(self, func):
+    def require_failCommand_fail_point(self, func: Any) -> Any:
         """Run a test only if the server supports the failCommand fail
         point.
         """

test/asynchronous/test_change_stream.py

@@ -771,8 +771,8 @@ class ProseSpecTestsMixin:
 class TestClusterAsyncChangeStream(TestAsyncChangeStreamBase, APITestsMixin):
     dbs: list
 
-    @async_client_context.require_version_min(4, 2, 0)
-    @async_client_context.require_change_streams
+    @async_client_context.require_version_min(4, 2, 0)  # type:ignore[untyped-decorator]
+    @async_client_context.require_change_streams  # type:ignore[untyped-decorator]
     async def asyncSetUp(self) -> None:
         await super().asyncSetUp()
         self.dbs = [self.db, self.client.pymongo_test_2]
@@ -831,8 +831,8 @@ class TestClusterAsyncChangeStream(TestAsyncChangeStreamBase, APITestsMixin):
 
 
 class TestAsyncDatabaseAsyncChangeStream(TestAsyncChangeStreamBase, APITestsMixin):
-    @async_client_context.require_version_min(4, 2, 0)
-    @async_client_context.require_change_streams
+    @async_client_context.require_version_min(4, 2, 0)  # type:ignore[untyped-decorator]
+    @async_client_context.require_change_streams  # type:ignore[untyped-decorator]
     async def asyncSetUp(self) -> None:
         await super().asyncSetUp()
 

test/asynchronous/test_encryption.py

@@ -233,7 +233,7 @@ class AsyncEncryptionIntegrationTest(AsyncIntegrationTest):
     """Base class for encryption integration tests."""
 
     @unittest.skipUnless(_HAVE_PYMONGOCRYPT, "pymongocrypt is not installed")
-    @async_client_context.require_version_min(4, 2, -1)
+    @async_client_context.require_version_min(4, 2, -1)  # type:ignore[untyped-decorator]
     async def asyncSetUp(self) -> None:
         await super().asyncSetUp()
 

test/test_bson.py

@@ -19,6 +19,7 @@ from __future__ import annotations
 import array
 import collections
 import datetime
+import importlib.util
 import mmap
 import os
 import pickle
@@ -71,6 +72,8 @@ from bson.son import SON
 from bson.timestamp import Timestamp
 from bson.tz_util import FixedOffset, utc
 
+_NUMPY_AVAILABLE = importlib.util.find_spec("numpy") is not None
+
 
 class NotADict(abc.MutableMapping):
     """Non-dict type that implements the mapping protocol."""
@@ -871,6 +874,65 @@ class TestBSON(unittest.TestCase):
             BinaryVector([1], BinaryVectorDtype.INT8), BinaryVector([2], BinaryVectorDtype.INT8)
         )
 
+    @unittest.skipIf(not _NUMPY_AVAILABLE, "numpy optional-dependency not installed.")
+    def test_vector_from_numpy(self):
+        """Follows test_vector except for input type numpy.ndarray"""
+        # Simple data values could be treated as any of our BinaryVectorDtypes
+        import numpy as np
+
+        arr = np.array([2, 3])
+        # INT8
+        binary_vector_int8 = Binary.from_vector(arr, BinaryVectorDtype.INT8)
+        # as_vector
+        vector = binary_vector_int8.as_vector()
+        assert isinstance(vector, BinaryVector)
+        assert vector.data == arr.tolist()
+        # as_numpy_vector
+        vector_np = binary_vector_int8.as_vector(return_numpy=True)
+        assert isinstance(vector_np, BinaryVector)
+        assert isinstance(vector_np.data, np.ndarray)
+        assert np.all(vector.data == arr)
+        # PACKED_BIT
+        binary_vector_uint8 = Binary.from_vector(arr, BinaryVectorDtype.PACKED_BIT)
+        # as_vector
+        vector = binary_vector_uint8.as_vector()
+        assert isinstance(vector, BinaryVector)
+        assert vector.data == arr.tolist()
+        # as_numpy_vector
+        vector_np = binary_vector_uint8.as_vector(return_numpy=True)
+        assert isinstance(vector_np, BinaryVector)
+        assert isinstance(vector_np.data, np.ndarray)
+        assert np.all(vector_np.data == arr)
+        # FLOAT32
+        binary_vector_float32 = Binary.from_vector(arr, BinaryVectorDtype.FLOAT32)
+        # as_vector
+        vector = binary_vector_float32.as_vector()
+        assert isinstance(vector, BinaryVector)
+        assert vector.data == arr.tolist()
+        # as_numpy_vector
+        vector_np = binary_vector_float32.as_vector(return_numpy=True)
+        assert isinstance(vector_np, BinaryVector)
+        assert isinstance(vector_np.data, np.ndarray)
+        assert np.all(vector_np.data == arr)
+
+        # Invalid cases
+        with self.assertRaises(ValueError):
+            Binary.from_vector(np.array([-1]), BinaryVectorDtype.PACKED_BIT)
+        with self.assertRaises(ValueError):
+            Binary.from_vector(np.array([128]), BinaryVectorDtype.PACKED_BIT)
+        with self.assertRaises(ValueError):
+            Binary.from_vector(np.array([-198]), BinaryVectorDtype.INT8)
+
+        # Unexpected cases
+        # Creating a vector of INT8 from a list of doubles will be caught by struct.pack
+        # Numpy's default behavior is to cast to the type requested.
+        list_floats = [-1.1, 1.1]
+        cast_bin = Binary.from_vector(np.array(list_floats), BinaryVectorDtype.INT8)
+        vector = cast_bin.as_vector()
+        vector_np = cast_bin.as_vector(return_numpy=True)
+        assert vector.data != list_floats
+        assert vector.data == vector_np.data.tolist() == [-1, 1]
+
     def test_unicode_regex(self):
         """Tests we do not get a segfault for C extension on unicode RegExs.
         This had been happening.

test/test_change_stream.py

@@ -757,8 +757,8 @@ class ProseSpecTestsMixin:
 class TestClusterChangeStream(TestChangeStreamBase, APITestsMixin):
     dbs: list
 
-    @client_context.require_version_min(4, 2, 0)
-    @client_context.require_change_streams
+    @client_context.require_version_min(4, 2, 0)  # type:ignore[untyped-decorator]
+    @client_context.require_change_streams  # type:ignore[untyped-decorator]
     def setUp(self) -> None:
         super().setUp()
         self.dbs = [self.db, self.client.pymongo_test_2]
@@ -817,8 +817,8 @@ class TestClusterChangeStream(TestChangeStreamBase, APITestsMixin):
 
 
 class TestDatabaseChangeStream(TestChangeStreamBase, APITestsMixin):
-    @client_context.require_version_min(4, 2, 0)
-    @client_context.require_change_streams
+    @client_context.require_version_min(4, 2, 0)  # type:ignore[untyped-decorator]
+    @client_context.require_change_streams  # type:ignore[untyped-decorator]
     def setUp(self) -> None:
         super().setUp()
 

test/test_encryption.py

@@ -233,7 +233,7 @@ class EncryptionIntegrationTest(IntegrationTest):
     """Base class for encryption integration tests."""
 
     @unittest.skipUnless(_HAVE_PYMONGOCRYPT, "pymongocrypt is not installed")
-    @client_context.require_version_min(4, 2, -1)
+    @client_context.require_version_min(4, 2, -1)  # type:ignore[untyped-decorator]
     def setUp(self) -> None:
         super().setUp()
 

test/utils_shared.py

@@ -377,7 +377,50 @@ def oid_generated_on_process(oid):
 
 
 def delay(sec):
-    return """function() { sleep(%f * 1000); return true; }""" % sec
+    """Along with a ``$where`` operator, this triggers an arbitrarily long-running
+    operation on the server.
+
+    This can be useful in time-sensitive tests (e.g., timeouts, signals).
+    Note that you must have at least one document in the collection or the
+    server may decide not to sleep at all.
+
+    Example
+    -------
+
+    .. code-block:: python
+
+        db.coll.insert_one({"x": 1})
+        db.test.find_one({"x": 1})
+        # {'x': 1, '_id': ObjectId('54f4e12bfba5220aa4d6dee8')}
+
+        # The following will wait 2.5 seconds before returning.
+        db.test.find_one({"$where": delay(2.5)})
+        # {'x': 1, '_id': ObjectId('54f4e12bfba5220aa4d6dee8')}
+
+    Using ``delay`` to provoke a KeyboardInterrupt
+    ----------------------------------------------
+
+    .. code-block:: python
+
+        import signal
+
+        # Raise KeyboardInterrupt in 1 second
+        def sigalarm(num, frame):
+            raise KeyboardInterrupt
+
+
+        signal.signal(signal.SIGALRM, sigalarm)
+        signal.alarm(1)
+
+        raised = False
+        try:
+            clxn.find_one({"$where": delay(1.5)})
+        except KeyboardInterrupt:
+            raised = True
+
+        assert raised
+    """
+    return "function() { sleep(%f * 1000); return true; }" % sec
 
 
 def camel_to_snake(camel):

uv.lock

@@ -969,6 +969,89 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/31/b4/b9b800c45527aadd64d5b442f9b932b00648617eb5d63d2c7a6587b7cafc/jmespath-1.0.1-py3-none-any.whl", hash = "sha256:02e2e4cc71b5bcab88332eebf907519190dd9e6e82107fa7f83b1003a6252980", size = 20256, upload-time = "2022-06-17T18:00:10.251Z" },
 ]
 
+[[package]]
+name = "librt"
+version = "0.7.3"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/b3/d9/6f3d3fcf5e5543ed8a60cc70fa7d50508ed60b8a10e9af6d2058159ab54e/librt-0.7.3.tar.gz", hash = "sha256:3ec50cf65235ff5c02c5b747748d9222e564ad48597122a361269dd3aa808798", size = 144549, upload-time = "2025-12-06T19:04:45.553Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/4d/66/79a14e672256ef58144a24eb49adb338ec02de67ff4b45320af6504682ab/librt-0.7.3-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:2682162855a708e3270eba4b92026b93f8257c3e65278b456c77631faf0f4f7a", size = 54707, upload-time = "2025-12-06T19:03:10.881Z" },
+    { url = "https://files.pythonhosted.org/packages/58/fa/b709c65a9d5eab85f7bcfe0414504d9775aaad6e78727a0327e175474caa/librt-0.7.3-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:440c788f707c061d237c1e83edf6164ff19f5c0f823a3bf054e88804ebf971ec", size = 56670, upload-time = "2025-12-06T19:03:12.107Z" },
+    { url = "https://files.pythonhosted.org/packages/3a/56/0685a0772ec89ddad4c00e6b584603274c3d818f9a68e2c43c4eb7b39ee9/librt-0.7.3-cp310-cp310-manylinux1_i686.manylinux_2_28_i686.manylinux_2_5_i686.whl", hash = "sha256:399938edbd3d78339f797d685142dd8a623dfaded023cf451033c85955e4838a", size = 161045, upload-time = "2025-12-06T19:03:13.444Z" },
+    { url = "https://files.pythonhosted.org/packages/4e/d9/863ada0c5ce48aefb89df1555e392b2209fcb6daee4c153c031339b9a89b/librt-0.7.3-cp310-cp310-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:1975eda520957c6e0eb52d12968dd3609ffb7eef05d4223d097893d6daf1d8a7", size = 169532, upload-time = "2025-12-06T19:03:14.699Z" },
+    { url = "https://files.pythonhosted.org/packages/68/a0/71da6c8724fd16c31749905ef1c9e11de206d9301b5be984bf2682b4efb3/librt-0.7.3-cp310-cp310-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:f9da128d0edf990cf0d2ca011b02cd6f639e79286774bd5b0351245cbb5a6e51", size = 183277, upload-time = "2025-12-06T19:03:16.446Z" },
+    { url = "https://files.pythonhosted.org/packages/8c/bf/9c97bf2f8338ba1914de233ea312bba2bbd7c59f43f807b3e119796bab18/librt-0.7.3-cp310-cp310-musllinux_1_2_aarch64.whl", hash = "sha256:e19acfde38cb532a560b98f473adc741c941b7a9bc90f7294bc273d08becb58b", size = 179045, upload-time = "2025-12-06T19:03:17.838Z" },
+    { url = "https://files.pythonhosted.org/packages/b3/b1/ceea067f489e904cb4ddcca3c9b06ba20229bc3fa7458711e24a5811f162/librt-0.7.3-cp310-cp310-musllinux_1_2_i686.whl", hash = "sha256:7b4f57f7a0c65821c5441d98c47ff7c01d359b1e12328219709bdd97fdd37f90", size = 173521, upload-time = "2025-12-06T19:03:19.17Z" },
+    { url = "https://files.pythonhosted.org/packages/7a/41/6cb18f5da9c89ed087417abb0127a445a50ad4eaf1282ba5b52588187f47/librt-0.7.3-cp310-cp310-musllinux_1_2_x86_64.whl", hash = "sha256:256793988bff98040de23c57cf36e1f4c2f2dc3dcd17537cdac031d3b681db71", size = 193592, upload-time = "2025-12-06T19:03:20.637Z" },
+    { url = "https://files.pythonhosted.org/packages/4c/3c/fcef208746584e7c78584b7aedc617130c4a4742cb8273361bbda8b183b5/librt-0.7.3-cp310-cp310-win32.whl", hash = "sha256:fcb72249ac4ea81a7baefcbff74df7029c3cb1cf01a711113fa052d563639c9c", size = 47201, upload-time = "2025-12-06T19:03:21.764Z" },
+    { url = "https://files.pythonhosted.org/packages/c4/bf/d8a6c35d1b2b789a4df9b3ddb1c8f535ea373fde2089698965a8f0d62138/librt-0.7.3-cp310-cp310-win_amd64.whl", hash = "sha256:4887c29cadbdc50640179e3861c276325ff2986791e6044f73136e6e798ff806", size = 54371, upload-time = "2025-12-06T19:03:23.231Z" },
+    { url = "https://files.pythonhosted.org/packages/21/e6/f6391f5c6f158d31ed9af6bd1b1bcd3ffafdea1d816bc4219d0d90175a7f/librt-0.7.3-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:687403cced6a29590e6be6964463835315905221d797bc5c934a98750fe1a9af", size = 54711, upload-time = "2025-12-06T19:03:24.6Z" },
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 ]
 
 [[package]]
@@ -1307,7 +1391,7 @@ mockupdb = [{ name = "mockupdb", git = "https://github.com/mongodb-labs/mongo-mo
 perf = [{ name = "simplejson", specifier = ">=3.17.0" }]
 pip = [{ name = "pip" }]
 typing = [
-    { name = "mypy", specifier = "==1.18.2" },
+    { name = "mypy", specifier = "==1.19.0" },
     { name = "pip" },
     { name = "pyright", specifier = "==1.1.407" },
     { name = "typing-extensions" },